Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs10109490 chr8:126156243 A/G 3.22E-5 177 25.35 28.87 4.17 KM Plot
PCPG rs10109574 chr8:126183992 A/G 2.95E-5 178 25.35 28.3 4.17 KM Plot
PCPG rs10110958 chr8:126232042 C/T 3.52E-5 176 25.35 25.4 4.17 KM Plot
PCPG rs10110998 chr8:33944534 C/T 0.000408 178 42.05 30.33 24.53 KM Plot
PCPG rs10111303 chr8:11304951 C/G 7.73E-6 178 25.77 19.43 14.15 KM Plot
PCPG rs10116037 chr9:36124839 A/C 0 178 25.47 24.5 2.93 KM Plot
PCPG rs10116121 chr9:36119242 T/G 0 178 25.47 24.5 2.93 KM Plot
PCPG rs10118668 chr9:36127897 T/C 0 178 25.4 26.05 2.93 KM Plot
PCPG rs10152581 chr15:56318102 G/A 8.23E-6 176 24.7 26.53 25.17 KM Plot
PCPG rs10153678 chr2:24268142 C/G 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs10153901 chr2:24304686 T/C 0.000118 177 25.28 26.57 17.43 KM Plot
PCPG rs10164787 chr2:24337248 A/G 0.000114 177 25.28 27.27 17.43 KM Plot
PCPG rs10164907 chr2:107205938 T/C 0.000232 172 27.08 23.88 25.87 KM Plot
PCPG rs10164930 chr2:24323987 G/A 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs10167808 chr2:24271980 C/G 0.000118 177 25.28 26.57 17.43 KM Plot